Download our event poster.
4-5 April 2019
RSBI (@RoBioinfo) and Faculty of Biology, Alexandru Ioan Cuza University of Iași
Aim The workshop is aimed at master and PhD students as well as young researchers working with protein sequences and structures. Several core bioinformatics techniques of sequence similarity searching as well as the UniProt database will be discussed. The workshop will also provide hands-on experience of exploring and analyzing the 3D macromolecular structure data available in the Protein Data Bank (PDB).
Registration is NOW CLOSED.
The deadline was March 10th, 2019. Info on methods and deadlines for payments as well as available accommodation will be communicated with the acceptance letter in due time.
Due to the limited capacity, we will favour attendees that would benefit the most from this workshop and could give back to the scientific community. We advise you to please pay special attention to the questions regarding the impact/benefit of you attending the workshop – these will be the ones used to select participants!
If you have any further inquires about registration, please contact the local organiser at: marius [dot] mihasan [at] uaic [dot] ro
Requirements Basic (undergrad level) understanding of Molecular Biology and Protein structure is a must. No prior experience of bioinformatics is required.
|9:00 – 9:30||Welcome note and coffee||Organisers|
|9:30 – 11:00||(hands on) Introduction to programming. Useful commands in Unix shell and Python||Claudiu Mihăilă|
|11:00 – 11:30||Coffee break|
|11:30 – 12:30||Introduction to sequence searching and alignments. DNA/RNA vs proteins sequences. Protein sequence and Function||Anna Marabotti, University of Salerno, Italy|
|12:30 – 13:30||Lunch|
|13:30 – 13:45||Introduction to EMBL-EBI resources and tools.||Hema Bye-A-Jee, EMBL-EBI, Cambridge|
|13:45 – 15:30||Protein Sequence Databases: UniProt.||Hema Bye-A-Jee, EMBL-EBI, Cambridge|
|15:30 – 16:00||Coffee Break|
|16:00 – 17:00||Protein Sequence Databases: UniProt.||Hema Bye-A-Jee, EMBL-EBI, Cambridge|
|17:00 – 17:30||Talk||Anna Marabotti, University of Salerno, Italy|
|9:00 – 10:00||(hands on) Introduction to programming. Programmatic access to public databases and data retrieval||Claudiu Mihăilă|
|10:00 – 10:30||Coffee Break|
|10:30 – 12:30||Introduction to macromolecular structure at the PDBe.||Matt Conroy, EMBL-EBI, Cambridge|
|12:30 – 13:30||Lunch|
|13:30 – 15:30||Introduction to macromolecular structure at the PDBe.||Matt Conroy, EMBL-EBI, Cambridge|
|15:30 – 16:00||Coffee break|
|16:00 – 16:30||Talk: Modeling biomolecular structures in the twilight zone and beyond||Andrei-J Petrescu, Institute of Biochemistry in Bucharest|
|16:30 – 17:00||Panel Discussion: AI for validating predicted protein structure||All speakers and trainers|
|17:00 – 17:15||Farewell|
|18:30||Beer and science event|
For the panel discussion, we encourage participants to consider the pros and cons, and perhaps read a few publications either side of the argument. Google’s AlphaFold may be a success story to discuss: https://deepmind.com/blog/alphafold/
Claudiu Mihăilă (London, UK)
Bogdan Mirăuță (Cambridge, UK)
Join the Beer and Science event on the 5th of April!